Description Usage Arguments Details Value

Reduce the space of the scores to its first principal components in order to display on it the associated gene pairs.

1 2 | ```
show_reduced_space(x, x_ixs = NULL, partition = NULL,
partition_ixs = NULL, PCs = 1:4, output_dir = NULL)
``` |

`x` |
data.frame; the table of scores |

`x_ixs` |
(optional) list containing a unique n-by-m matrix of boolean indexes
resulting from the |

`partition` |
(optional) vector; partition of |

`partition_ixs` |
(optional) list of n-by-m matrices of boolean indexes
resulting from |

`PCs` |
numeric vector of Principal Compenents to be considered (max = 5) |

`output_dir` |
(optional) path to a directory where to store all the plots |

the function `show_reduced_space`

returns a graphical object
composed of 2 up to 5 elements:

- PCA_information
The graphical informations about the PCA

- population
Show all the gene pairs in the reduced space

- population_samples
Show the sampled gene pairs within the population (

`ixs`

must be provided)- clusters
Show the different clusters of the population (

`partition`

must be provided)- clusters_samples
Show the different sampled gene pairs within each clusters (

`partition_ixs`

must be provided)

Returns a list of plots

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