show_associations: show_associations

In charles-bernard/mage: Mine Associated Gene Expressions (from single-cell Rna Seq data)

Description

Produces the scatterplot of each sampled association between 2 genes inside each cluster of a partition

Usage

show_associations(x, y, partition, partition_ixs, output_dir)

Arguments

x	data.frame; the table of scores
y	matrix; the gene expression matrix (rownames corresponding to genes and colnames to cells)
partition	vector; partition of x into k clusters
partition_ixs	list of n-by-m matrices of boolean indexes resulting from sample function where n is the number of individuals in a given cluster of the partition and m is is the number of methods used for the sampling
output_dir	path to a directory where to store all the plots

charles-bernard/mage documentation built on May 14, 2019, 2 a.m.