ATAC_Wrapper: Wrap Seurat ATAC clustering

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

Wrap Seurat ATAC clustering

Description

This function allows you to perform standard sc-ATAC clustering

Usage

ATAC_Wrapper(MTX, res = 0.3, dim1 = 1, dim2 = 20)

Arguments

MTX	sparse Matrix of class "dgCMatrix", each row is a peak, each column is a cell,
res	clustering resolution, default=0.5

Value

this returns seurat object with ATAC clustering

Examples

bmmc.filtered.atac<-SeuratLSIClustering(PeakVSCell.filtered.Mtx) #each row is a peak, each column is a cell,

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.