DE.gettripple | R Documentation |
This function is to prepare the data format that is used to differentially expression calling. It include the raw matrix; data.info and size effect
DE.gettripple(datapair, cpcol, withscran = F)
datapair |
tyhe datapair generated from datapair.mk |
cpcol |
The column name for comparison. |
withscran |
if true, use deconvolution to calculate size effect. |
This will return .tri.dummy file that is the input for DE analysis
ROCKvsnorock.endo.tri.dummy<-DE.gettripple(ROCKvsnorock.endo.paired,cpcol="name")
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