Add_tree_cut-redeemR-method: a function to cut tree using assigned variant as...

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

a function to cut tree using assigned variant as branch-length on edge

Description

a function to cut tree using assigned variant as branch-length on edge

Usage

## S4 method for signature 'redeemR'
Add_tree_cut(
  redeemR = DN4_stemcell_redeemR.seed.verysensitive,
  MinCell = 30,
  N = 1,
  prob.cut = 0.3,
  Dumpcut = 100
)

Arguments

redeemR	Need to have had the tree built
MinCell	The minimum number of cells in each clone, otherwise merge with sibling
N	branch length to cut the tree
Dumpcut	Number of can be tolerated to be removed to fulfill the right side. The small value-> Less unassignment, big clones

Value

redeemR object

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.