Fun.enrich_withFC.pvalue | R Documentation |
This function is to do GSEA enrichment analysis, to be updated
Fun.enrich_withFC.pvalue(
markergenesList,
All.genes = all.genes.refer,
db = msig.db,
qcutoff = 0.05,
top = NULL
)
markergenesList |
is a list containing several elements each of which is a vector of gene names |
All.genes |
the background genes data(all.genes.refer) |
db |
=msig.db the term database to use, default is the msig.db; data(msig.db) |
qcutoff=0.05 |
the term to show with q value lower than 0.05 |
top=NULL |
pass a number to only show top # terms |
this will return a simple object with two elements, one is the table to show the significant terms , the other one shows the gene names involved significant terms
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.