DoDE: DoDE

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

DoDE

Description

This is the main function for calculating differentially expressed genes

Usage

DoDE(tri.dummy, cpcol, onlyoneSample = F, cpus = 16)

Arguments

tri.dummy	this is generated from DE.gettripple
cpcol	the column in tri.dummy$info, the contents of which are used for iteratively compare with one another
onlyoneSample	If true, regress out batch effect. Notice, there should be a "Sample" column in in tri.dummy$info that indicate sample or donor or batch
cpus	a number of cpus being used for calculation, default is 16

Value

return a list that includes all DE result iteratively

Examples

ROCKvsnorock.endo.de<-DoDE(ROCKvsnorock.endo.tri.dummy,"name",onlyoneSample=T,cpus=16)

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.