CW_mgatk.read: Old Function to read in redeemV outputs It process the data...

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

Old Function to read in redeemV outputs It process the data same way as redeemR.read but simultanously reading in all threadhold as a list This function allows you to read raw data from XX/final folder, the output from redeemV

Description

Old Function to read in redeemV outputs It process the data same way as redeemR.read but simultanously reading in all threadhold as a list This function allows you to read raw data from XX/final folder, the output from redeemV

Usage

CW_mgatk.read(path, Processed = F)

Arguments

path	The XX/final folder, the output from mitoV
Processed	Boolean variable (Default F), if true directly readRDS("VariantsGTSummary.RDS") or, generate and saveout "VariantsGTSummary.RDS"

Value

this returns depth which is a list of 4 df (Total/VerySensitive/Sensitive/Specific), each is a genotype summary

Examples

WD<-"/lab/solexa_weissman/cweng/Projects/MitoTracing_Velocity/SecondaryAnalysis/Donor01_CD34_1_Multiomekit/MTenrichCombine/Enrich/CW_mgatk/final"
DN1CD34_1.VariantsGTSummary<-CW_mgatk.read(WD,Processed =T)

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.