Make_Cells4Nodes: Define a function to make a list, each contains the cell...

In chenweng1991/scMitoTracing: R package for Regulatory multi-omics with Deep Mitochondrial mutation profiling

Define a function to make a list, each contains the cell names for a node

Description

Define a function to make a list, each contains the cell names for a node

Usage

Make_Cells4Nodes(
  tr = DN4_SLCT_HSC_w_jaccard.njtree@phylo,
  min.node.size = 10,
  max.node.fra = 0.33
)

Arguments

tr	phylo object (ape)
min.node.size	default is 10, only the nodes with more than 10 tips are included ( # Minimum # tips in the node to be included)
max.node.fra	default is 0.33, only consider the nodes with less than max.node.fra*total cell number (# The up limit of the node size(Fraction of all tips) to be considered)

Value

return a list each contains the cell names for a node that meets the criteria

chenweng1991/scMitoTracing documentation built on July 2, 2024, 8:41 p.m.