claudiacava/SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

The aims of SpidermiR are : i) facilitate the network open-access data retrieval from GeneMania data, ii) prepare the data using the appropriate gene nomenclature, iii) integration of miRNA data in a specific network, iv) provide different standard analyses and v) allow the user to visualize the results. In more detail, the package provides multiple methods for query, prepare and download network data (GeneMania), and the integration with validated and predicted miRNA data (mirWalk, miR2Disease,miRTar, miRTarBase, miRandola,Pharmaco-miR,DIANA, Miranda, PicTar and TargetScan) and the use of standard analysis (igraph) and visualization methods (networkD3).

Getting started

Package details

AuthorClaudia Cava, Antonio Colaprico, Alex Graudenzi, Gloria Bertoli, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Bioconductor views GeneRegulation Network miRNA
MaintainerClaudia Cava <[email protected]>
LicenseGPL (>= 3)
Version1.9.3
URL https://github.com/claudiacava/SpidermiR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("claudiacava/SpidermiR")
claudiacava/SpidermiR documentation built on Dec. 29, 2017, 5:48 a.m.