Man pages for claudiacava/SpidermiR
SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

Case_Study1_loading_1_networkLoading 1 network of shared protein domanin
Case_Study1_loading_2_networkLoading 2 network of shared protein domanin
Case_Study1_loading_3_networkLoading 3 network of shared protein domanin
Case_Study1_loading_4_networkLoading 4 network of shared protein domanin
Case_Study2_loading_1_networkLoading 1 network of Protein Interactions (PI)
Case_Study2_loading_2_networkLoading 2 network of Protein Interactions (PI) with miRNAs
Case_Study2_loading_3_networkLoading 3 network of Protein Interactions (PI) with miRNAs
Data_CANCER_normUQ_filtTCGA data for breast cancer
dataClinclinical data for prostate cancer
SpidermiRDownload data
SpidermiRanalyze_Community_detectionFind community detection
SpidermiRanalyze_Community_detection_biCommunity detection from biomarkers of interest
SpidermiRanalyze_Community_detection_netFind the network of community detection and direct biormarker
SpidermiRanalyze_degree_centralityRanking degree centrality genes
SpidermiRanalyze_DEnetworkTCGAIntegration with TCGA data in order to obtain a network of...
SpidermiRanalyze_direct_netSearching by biomarkers of interest with direct interaction
SpidermiRanalyze_direct_subnetworkSearching by biomarkers of interest with direct interaction...
SpidermiRanalyze_mirna_gene_complnetIntegration of microRNA target gene networks.
SpidermiRanalyze_mirnanet_pharmIntegration of pharmacomiR in the network
SpidermiRanalyze_mirna_networkIntegration of microRNA target networks.
SpidermiRanalyze_subnetwork_neighSearching by biomarkers of interest and all the edges among...
SpidermiRdownload_miRNAextra_cirDownload miRNA validated database
SpidermiRdownload_miRNALNC_miRNADownload microRNAs binding sites on long non coding RNA from...
SpidermiRdownload_miRNALNC_RNADownload Long Non-Coding RNA (LNC-RNA) from lncRNome database
SpidermiRdownload_miRNApredictionDownload miRNA predicted database
SpidermiRdownload_miRNAvalidateDownload miRNA validated database
SpidermiRdownload_netDownload the network from GeneMania.
SpidermiRdownload_pharmacomirDownload both miRNA target and the gene-drug interaction from...
SpidermiRprepare_NETPrepare matrix of gene network from Genamania with Ensembl...
SpidermiRquery_diseaseVisualize disease categories
SpidermiRquery_networks_typeNetwork categories
SpidermiRquery_speciesSearching by network species
SpidermiRquery_spec_networksSearching by network categories
SpidermiRvisualize_3Dbarplotplots the 3D barplot
SpidermiRvisualize_adj_matrixplots the adjacency matrix of the network
SpidermiRvisualize_BIVisualize results obtained by SpidermiR analysis starting...
SpidermiRvisualize_degree_distplots the degree distribution of the network
SpidermiRvisualize_directionVisualize results obtained by SpidermiR analysis with the...
SpidermiRvisualize_mirnanetVisualize results obtained by SpidermiR analysis
SpidermiRvisualize_plot_targetVisualize results obtained by SpidermiRanalyze_mirna_network
claudiacava/SpidermiR documentation built on Nov. 8, 2017, 9:45 a.m.