SpidermiRprepare_NET: Prepare matrix of gene network from Genamania with Ensembl...

In claudiacava/SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

Prepare matrix of gene network from Genamania with Ensembl Gene ID, and gene symbols

Description

The user in this step obtained a gene network matrix with the integration of gene symbols ID.

Usage

SpidermiRprepare_NET(organismID, data)

Arguments

organismID	is the index of SpidermiRquery_spec_networks output
data	is the output of function SpidermiRdownload_net

Value

A list of tables.

Examples

org<-SpidermiRquery_species(species)
net_shar_prot<-SpidermiRquery_spec_networks(organismID = org[9,],
network = "SHpd")
out_net<-SpidermiRdownload_net(data=net_shar_prot)
geneSymb_net<-SpidermiRprepare_NET(organismID = org[9,],
                                       data = out_net)

claudiacava/SpidermiR documentation built on Oct. 11, 2022, 4:52 p.m.