SpidermiRanalyze_direct_subnetwork: Searching by biomarkers of interest with direct interaction...
In claudiacava/SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
View source: R/SpidermiRanalyze.R
SpidermiRanalyze_direct_subnetwork R Documentation
Searching by biomarkers of interest with direct interaction by ONLY the nodes in BI
Description
SpidermiRanalyze_direct_subnetwork creates a sub network composed by ONLY the nodes in genes of interest and the edges between them
Usage
SpidermiRanalyze_direct_subnetwork(data, BI)
Arguments
data
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
BI
a set of biomarkers of interest
Value
dataframe with direct interaction of biomarkers of interest
Examples
miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
subnet<-SpidermiRanalyze_direct_subnetwork(data=miRNA_cN,BI=biomark_of_interest)
claudiacava/SpidermiR documentation built on Oct. 11, 2022, 4:52 p.m.
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View source: R/SpidermiRanalyze.R
| SpidermiRanalyze_direct_subnetwork | R Documentation |
Searching by biomarkers of interest with direct interaction by ONLY the nodes in BI
Description
SpidermiRanalyze_direct_subnetwork creates a sub network composed by ONLY the nodes in genes of interest and the edges between them
Usage
SpidermiRanalyze_direct_subnetwork(data, BI)
Arguments
data |
SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet |
BI |
a set of biomarkers of interest |
Value
dataframe with direct interaction of biomarkers of interest
Examples
miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
subnet<-SpidermiRanalyze_direct_subnetwork(data=miRNA_cN,BI=biomark_of_interest)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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