SpidermiRanalyze_subnetwork_neigh: Searching by biomarkers of interest and all the edges among...

In claudiacava/SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

Searching by biomarkers of interest and all the edges among this bunch of nodes

Description

SpidermiRanalyze_subnetwork_neigh create a sub network composed by the nodes in BI and, if some of them are connected to other nodes (even if not in BI), take also them (include all the edges among this bunch of nodes).

Usage

SpidermiRanalyze_subnetwork_neigh(data, BI)

Arguments

data	SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
BI	a set of biomarkers of interest

Value

dataframe with interactions

Examples

miRNA_cN <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
GIdirect_net_neigh<-SpidermiRanalyze_subnetwork_neigh(data=miRNA_cN,BI=biomark_of_interest)

claudiacava/SpidermiR documentation built on Oct. 11, 2022, 4:52 p.m.