SpidermiRanalyze_direct_net: Searching by biomarkers of interest with direct interaction

In claudiacava/SpidermiR: SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

Searching by biomarkers of interest with direct interaction

Description

SpidermiRanalyze_direct_net finds other biomarkers that are related to a set of biomarkers of interest (the input of user) with direct interations.

Usage

SpidermiRanalyze_direct_net(data, BI)

Arguments

data	SpidermiRanalyze_mirna_network output or SpidermiRanalyze_mirna_gene_complnet
BI	a set of biomarkers of interest

Value

dataframe with direct interaction of biomarkers of interest

Examples

miRNA_cN <-data.frame(gA=c('hsa-let-7a','FOXM1'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE)
biomark_of_interest<-c("hsa-let-7a","CDK","FOXO1","hsa-miR-27a")
GIdirect_net<-SpidermiRanalyze_direct_net(data=miRNA_cN,BI=biomark_of_interest)

claudiacava/SpidermiR documentation built on Oct. 11, 2022, 4:52 p.m.