tests/testthat/_snaps/adiv_boxplot.md

In cmmr/rbiom: Read/Write, Analyze, and Visualize 'BIOM' Data

adiv_boxplot_1

Code
  p[["stats"]]
Output
  $pairwise
      n         Test         Group1        Group2   .p.val   .adj.p
  1  20 Mann-Whitney Anterior nares Buccal mucosa 9.71e-01 9.71e-01
  2  20 Mann-Whitney Anterior nares    Mid vagina 1.50e-03 1.88e-03
  3  20 Mann-Whitney Anterior nares        Saliva 1.08e-05 4.33e-05
  4  19 Mann-Whitney Anterior nares         Stool 2.17e-05 4.33e-05
  5  20 Mann-Whitney  Buccal mucosa    Mid vagina 1.50e-03 1.88e-03
  6  20 Mann-Whitney  Buccal mucosa        Saliva 2.17e-05 4.33e-05
  7  19 Mann-Whitney  Buccal mucosa         Stool 1.45e-03 1.88e-03
  8  20 Mann-Whitney     Mid vagina        Saliva 1.08e-05 4.33e-05
  9  19 Mann-Whitney     Mid vagina         Stool 2.17e-05 4.33e-05
  10 19 Mann-Whitney         Saliva         Stool 2.99e-03 3.32e-03

adiv_boxplot_2

Code
  p[["stats"]]
Output
  $groupwise
       Sex .metric  n           Test .p.val .adj.p
  1 Female    <NA> 60 Kruskal-Wallis 0.0131 0.0263
  2   Male    <NA> 38 Kruskal-Wallis 0.0740 0.0740

adiv_boxplot_3

Code
  p[["stats"]]
Output
  $groupwise
         Body Site  n         Test .p.val .adj.p
  1 Anterior nares 10 Mann-Whitney  1.000      1
  2  Buccal mucosa 10 Mann-Whitney  0.310      1
  3     Mid vagina 10         <NA>  1.000      1
  4         Saliva 10 Mann-Whitney  0.548      1
  5          Stool  9 Mann-Whitney  0.905      1

cmmr/rbiom documentation built on April 28, 2024, 6:38 a.m.