ssanmat: A Symmetric Scaled Ambiguous Nucleotide scoring Matrix (SSAN...
In cnobles/gintools: Genomic DNA Integration Analysis Tools
View source: R/nucleotide_scoring_matrices.R
Description
Meant for comparing ambiguous sequences against other sequences
possibly containing ambiguous nucleotides. The scores are scaled between 0
and 1 for ambiguous matches based on overlaping proportions and the matrix is
symmetric. Constructed originally from NUC4.4. Function outputs a single
square matrix.
Usage
1
ssanmat()
Author(s)
Christopher Nobles, Ph.D.
cnobles/gintools documentation built on Aug. 22, 2019, 10:36 a.m.
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View source: R/nucleotide_scoring_matrices.R
Description
Meant for comparing ambiguous sequences against other sequences possibly containing ambiguous nucleotides. The scores are scaled between 0 and 1 for ambiguous matches based on overlaping proportions and the matrix is symmetric. Constructed originally from NUC4.4. Function outputs a single square matrix.
Usage
1 | ssanmat()
|
Author(s)
Christopher Nobles, Ph.D.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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