Description Usage Arguments Details Author(s) Examples
Format a set of GRanges objects for geneRxCluster
1 | scan_format(query, subject, grouping = NULL)
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query |
GRanges object consistent with integration sites, will be associated with grp = 0. |
subject |
GRanges object consistent with integration sites, will be associated with grp = 1. |
grouping |
character name of metadata column in GRanges object to be used for defining groups. Groups will be made unique independently, meaning if the same event is observed in two different groups, they are both kept, but if they occur in the same group, they will be made one. |
Formats a GRanges object for use with the geneRxCluster functions, specifically the scan statistics of gRxCluster.
Christopher Nobles, Ph.D.
1 2 3 | gr1 <- gintools:::generate_test_granges()
gr2 <- gintools:::generate_test_granges()
scan_format(gr1, gr2)
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