scan_format: Format a set of GRanges objects for geneRxCluster
In cnobles/gintools: Genomic DNA Integration Analysis Tools
Description
Usage
Arguments
Details
Author(s)
Examples
Description
Format a set of GRanges objects for geneRxCluster
Usage
1
scan_format(query, subject, grouping = NULL)
Arguments
query
GRanges object consistent with integration sites, will be
associated with grp = 0.
subject
GRanges object consistent with integration sites, will be
associated with grp = 1.
grouping
character name of metadata column in GRanges object to be
used for defining groups. Groups will be made unique independently, meaning
if the same event is observed in two different groups, they are both kept,
but if they occur in the same group, they will be made one.
Details
Formats a GRanges object for use with the geneRxCluster
functions, specifically the scan statistics of gRxCluster.
Author(s)
Christopher Nobles, Ph.D.
Examples
1
2
3
gr1 <- gintools:::generate_test_granges()
gr2 <- gintools:::generate_test_granges()
scan_format(gr1, gr2)
cnobles/gintools documentation built on Aug. 22, 2019, 10:36 a.m.
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Description Usage Arguments Details Author(s) Examples
Description
Format a set of GRanges objects for geneRxCluster
Usage
1 | scan_format(query, subject, grouping = NULL)
|
Arguments
query |
GRanges object consistent with integration sites, will be associated with grp = 0. |
subject |
GRanges object consistent with integration sites, will be associated with grp = 1. |
grouping |
character name of metadata column in GRanges object to be used for defining groups. Groups will be made unique independently, meaning if the same event is observed in two different groups, they are both kept, but if they occur in the same group, they will be made one. |
Details
Formats a GRanges object for use with the geneRxCluster functions, specifically the scan statistics of gRxCluster.
Author(s)
Christopher Nobles, Ph.D.
Examples
1 2 3 | gr1 <- gintools:::generate_test_granges()
gr2 <- gintools:::generate_test_granges()
scan_format(gr1, gr2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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