Description Usage Arguments Details Author(s) Examples
Given a GRangesList of integration site sets, this function will return a GRangesList (separated by position ID) of all sites shared within the gap distance between the sets. Using the track.origin option (default = TRUE) will append a column to the metadata of the GRanges objects designating which set they originated in. If the GRangesList has names, these designations will be the names of the list items. Note: as the output is a GRangesList separated by position ID, some list objects may appear to come only from one origin set, but they will overlap within the gap distance to another list object from a different origin.
1 2 3 | track_clones(sites.list)
track_clones(sites.list, gap = 5L, track.origin = TRUE)
|
sites.list |
a GRangesList object containing sets of integration sites or ranges (one per row). |
gap |
an integer designating the nucleotide distance or window for which to group integration sites. |
track.origin |
logical for whether to append information regarding the origin of the integration site. Use if there is no sample information in the metadata columns of the input GRanges objects. |
quiet |
logical for whether or not to message to the terminal processing findings. True by default. |
track_clones
returns a GRangesList of integration sites shared between
multiple GRanges objects.
Christopher Nobles, Ph.D.
1 2 3 4 5 6 7 8 9 10 11 12 13 |
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