add_in_taxa_ncbi: Adds in taxa if NCBI database Returns MetaScope Table with...

In compbiomed/MetaScope: Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Adds in taxa if NCBI database Returns MetaScope Table with NCBI taxa in separate columns

Description

Adds in taxa if NCBI database Returns MetaScope Table with NCBI taxa in separate columns

Usage

add_in_taxa_ncbi(metascope_id_in, NCBI_key, param)

Arguments

metascope_id_in	MetaScope ID file with NCBI taxa qnames
NCBI_key	(character) NCBI Entrez API key. optional. See taxize::use_entrez(). Due to the high number of requests made to NCBI, this function will be less prone to errors if you obtain an NCBI key.

compbiomed/MetaScope documentation built on Nov. 20, 2024, 8 p.m.