API for compbiomed/animalcules
Statistical microbiome analysis on metagenomics data

Global functions
MAE Man page
align_target Man page Source code
alpha_div_boxplot Man page Source code
alpha_div_test Man page Source code
animalcules Man page
animalcules-package Man page
animalcules_id Man page Source code
bam_reheader_R Man page Source code
combined_header Man page Source code
counts_to_logcpm Man page Source code
counts_to_relabu Man page Source code
demultiplex Man page Source code
df_char_to_factor Man page Source code
differential_abundance Man page Source code
dimred_pca Man page Source code
dimred_pcoa Man page Source code
diversities Man page Source code
diversities_help Man page Source code
diversity_beta_boxplot Man page Source code
diversity_beta_heatmap Man page Source code
diversity_beta_test Man page Source code
do_alpha_div_test Man page Source code
download_refseq Man page Source code
extractReads Man page Source code
filter_categorize Man page Source code
filter_summary_bottom Man page Source code
filter_summary_top Man page Source code
filter_unmapped_reads Man page Source code
find_biomarker Man page Source code
find_taxon_mat Man page Source code
find_taxonomy Man page Source code
find_taxonomy_300 Man page Source code
gini_simpson Man page Source code
grep_tid Man page Source code
inverse_simpson Man page Source code
is.categorical Man page Source code
is.integer0 Man page Source code
mae_pick_organisms Man page Source code
mae_pick_samples Man page Source code
merge_bam_files Man page Source code
mk_subread_index Man page Source code
pct2str Man page Source code
percent Man page Source code
read_pathoscope_data Man page Source code
relabu_barplot Man page Source code
relabu_boxplot Man page Source code
relabu_heatmap Man page Source code
run_animalcules Man page Source code
shannon Man page Source code
simpson_index Man page Source code
upsample_counts Man page Source code
compbiomed/animalcules documentation built on Jan. 17, 2019, 6 a.m.