diversities: Get alpha diversity
In compbiomed/animalcules: Interactive microbiome analysis toolkit
diversities R Documentation
Get alpha diversity
Description
Get alpha diversity
Usage
diversities(counts_table, index = "all", zeroes = TRUE)
Arguments
counts_table
A dataframe with organism x sample
index
One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit
zeroes
A boolean for whether to ignore zero values
Value
A list of alpha diversity
Examples
diversities(matrix(seq_len(12), nrow = 3), index = "shannon")
compbiomed/animalcules documentation built on Feb. 7, 2024, 12:13 p.m.
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| diversities | R Documentation |
Get alpha diversity
Description
Get alpha diversity
Usage
diversities(counts_table, index = "all", zeroes = TRUE)
Arguments
counts_table |
A dataframe with organism x sample |
index |
One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit |
zeroes |
A boolean for whether to ignore zero values |
Value
A list of alpha diversity
Examples
diversities(matrix(seq_len(12), nrow = 3), index = "shannon")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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