diversity_beta_boxplot: Beta diversity boxplot

In compbiomed/animalcules: Interactive microbiome analysis toolkit

Beta diversity boxplot

Description

Beta diversity boxplot

Usage

diversity_beta_boxplot(
  MAE,
  tax_level,
  input_beta_method,
  input_select_beta_condition
)

Arguments

MAE	A multi-assay experiment object
tax_level	The taxon level used for organisms
input_beta_method	bray, jaccard
input_select_beta_condition	Which condition to group samples

Value

A plotly object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
p <- diversity_beta_boxplot(toy_data,
  tax_level = "genus",
  input_beta_method = "bray",
  input_select_beta_condition = "DISEASE"
)
p

compbiomed/animalcules documentation built on Feb. 7, 2024, 12:13 p.m.