mae_pick_organisms: Modify organisms of multi-assay experiment object
In compbiomed/animalcules: Interactive microbiome analysis toolkit

mae_pick_organisms

R Documentation

Modify organisms of multi-assay experiment object

Description

Modify organisms of multi-assay experiment object

Usage

mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)

Arguments

`MAE`	A multi-assay experiment object
`isolate_organisms`	Isolate specific organisms e.g. ti\|001, ti\|002
`discard_organisms`	Discard specific organisms e.g. ti\|001, ti\|002

Value

A multi-assay experiment object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data,
  isolate_organisms = c("ti|001", "ti|002")
)

compbiomed/animalcules documentation built on Feb. 7, 2024, 12:13 p.m.