filter_summary_pie_box: Data visualization by pie chart / box plot

In compbiomed/animalcules: Interactive microbiome analysis toolkit

Data visualization by pie chart / box plot

Description

Data visualization by pie chart / box plot

Usage

filter_summary_pie_box(
  MAE,
  samples_discard = NULL,
  filter_type,
  sample_condition
)

Arguments

MAE	A multi-assay experiment object
samples_discard	The list of samples to filter
filter_type	Either 'By Microbes' or 'By Metadata'
sample_condition	Which condition to check e.g. 'SEX'

Value

A plotly object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
result <- filter_summary_pie_box(toy_data,
  samples_discard = c("subject_2", "subject_4"),
  filter_type = "By Microbes",
  sample_condition = "SEX"
)
result

compbiomed/animalcules documentation built on Feb. 7, 2024, 12:13 p.m.