View source: R/plot.reduced.dim.interactive.R
plot.reduced.dim.interactive | R Documentation |
Interactive plot of reduced dimensions and labels
## S3 method for class 'reduced.dim.interactive' plot( object, reduction, assay, clust.method, column, pt.size = 5, dimensions, cells = NULL, ... )
object |
An IBRAP S4 class object |
reduction |
Character. Which reduction to use to display points |
assay |
Character. Which assay within the object to access |
clust.method |
Character. Which clustering method to access, supply the name of any dataframe contained in the cluster_assignments sections. If you wish to access metadata, just specify 'metadata' |
column |
Character. Which column to access within the supplied clust.column |
pt.size |
Numeric. What should the point size be |
dimensions |
Numeric. How many dimensions should be displayed, can be either 2 or 3 |
cells |
Numeric. Which cells should be subset for plotting, Default = NULL |
An interactive plot of reduced dimensions annotated with assignments
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