plot.variance: Plot reduction explained variance

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Plot reduction explained variance

Description

Shows the explained variance for a reduction for selecting how many dimensions to use downstream

Usage

## S3 method for class 'variance'
plot(object, assay, reduction, ...)

Arguments

object	IBRAP S4 class object
assay	Character. String containing indicating which assay to use
reduction	Character. Which reductions to access within the supplied assays
...	Arguments to be passed to ggpubr::ggarrange

Value

Plots showing the supplied reductions explained variance

Examples

object <- plot.variance(object = object, 
                        assay = c('SCT', 'SCRAN', 'SCANPY'), 
                        reduction = 'pca')

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.