plot.vln: Plot of violin plot of defined features

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Plot of violin plot of defined features

Description

Plot of violin plot of defined features

Usage

## S3 method for class 'vln'
plot(
  object,
  assay,
  slot,
  features,
  group.by,
  title = NULL,
  xlab = "group",
  ylab = "expression"
)

Arguments

object	An IBRAP S4 class object
assay	Character. Which assay within the object to access
slot	Character. Which expression matrix would you like to access. Default = 'normalised'
features	Character. Which features should be plotted, it is not recommended to exceed 3 but can be more if your screen size is larger.
group.by	Vector. What should the cell types be split by.
title	Character. What should be the overall title of the plot. Default = NULL
xlab	Character. What should by the x axis title. Default = 'group'
ylab	Character. What shoul be the y axis title. Default = 'expression'

Value

A violin plot of defined gene expression and groups

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.