prepare.for.dittoSeq: Create a SCE object to use for creating plots in dittoSeq

In connorhknight/IBRAP: Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Create a SCE object to use for creating plots in dittoSeq

Description

Create a SCE object to use for creating plots in dittoSeq

Usage

prepare.for.dittoSeq(
  object,
  assay,
  slot = "normalised",
  clust.method,
  column,
  reduction = NULL,
  ...
)

Arguments

object	An IBRAP S4 class object
assay	Character. Which assay within the object to access
reduction	Character. Which reduction to use to display points
clust.method.	Character. Whcih cluster assignments should be added to the metadata. the dataframe contained in 'object@sample_metadata' is alread contained in the object. NULL will mean only sample_metadata will be in the returned object
pt.size	Numeric. What should the point size be
cells	Numeric. Which cells should be subset for plotting, Default = NULL

Value

A SCE object containing

connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.