fcoex-class: An S4 class to represent the fcoex analysis.
In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells

An S4 class to represent the fcoex analysis.

expression: Normalized gene expression table from single-cells data.frame.
discretized_expression: Discretized gene expression table from single-cells data.frame.
target: Original target classes for the cells (factor).
selected_genes: Character vector containing the names of genes selected for analysis
module_list: list containing genes in each module.
adjacency: data.frame containing the adjacency table for the selected genes before trimming.
adjacency_trimmed: data.frame containing the adjacency table for the selected genes after trimming.
coex_network_plot: list of ggplot graphs with module gene interactions.
new_clusters: list containing gene interactions present in modules.
mod_colors: character vector containing colors associated with each network module.
ora: Over-representation analysis results data.frame.
barplot_ora: list of ggplot graphs with over-representation analysis results per module.
mod_idents: Identities of cells based on each co-expression module. Determined by the "recluster" method
parameters: list containing analysis parameters.