mini_pbmc3k: Processed subset of the pbmc3k dataset from PBMC genomics

Description Usage Format Details Examples

Description

A subset with 600 sampled cells and the top 1700 variable genes from the TENxPBMCData package pbmc3k dataset.

Usage

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Format

An object of class SingleCellExperiment

Details

Preprocessed in accordance to OSCA (August 2019, https://osca.bioconductor.org/)

scater::normalized . PCA with 50 components. snn graph on the PCA space + louvain clustering to yield 8 clusters . UMAP already ran

Examples

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csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.