mini_pbmc3k: Processed subset of the pbmc3k dataset from PBMC genomics
In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells
Description
Usage
Format
Details
Examples
Description
A subset with 600 sampled cells and the top 1700 variable
genes from the TENxPBMCData package pbmc3k dataset.
Usage
1
Format
An object of class SingleCellExperiment
Details
Preprocessed in accordance to OSCA (August 2019,
https://osca.bioconductor.org/)
scater::normalized .
PCA with 50 components.
snn graph on the PCA space + louvain clustering to yield 8 clusters .
UMAP already ran
Examples
1
2
csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.
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Description Usage Format Details Examples
Description
A subset with 600 sampled cells and the top 1700 variable genes from the TENxPBMCData package pbmc3k dataset.
Usage
1 |
Format
An object of class SingleCellExperiment
Details
Preprocessed in accordance to OSCA (August 2019, https://osca.bioconductor.org/)
scater::normalized . PCA with 50 components. snn graph on the PCA space + louvain clustering to yield 8 clusters . UMAP already ran
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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