plot_ora_single: ORA visualization for one module

In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells

Description

This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.

Usage

plot_ora_single(
  es,
  ordr_by = "p.adjust",
  max_length = 50,
  pv_cut = 0.05,
  graph_color = "#4169E1",
  title = "Over Representation Analysis"
)

Arguments

es	a data.frame from ora function containing only one module
ordr_by	column to order the data.frame
max_length	max length of a gene set name
pv_cut	p-value cuttoff
graph_color	color of bars
title	title of the graph

Value

a list with ggplot2 object and the number of significant gene sets

csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.