plot_ora_single: ORA visualization for one module

Description Usage Arguments Value

View source: R/visualization.R

Description

This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.

Usage

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plot_ora_single(
  es,
  ordr_by = "p.adjust",
  max_length = 50,
  pv_cut = 0.05,
  graph_color = "#4169E1",
  title = "Over Representation Analysis"
)

Arguments

es

a data.frame from ora function containing only one module

ordr_by

column to order the data.frame

max_length

max length of a gene set name

pv_cut

p-value cuttoff

graph_color

color of bars

title

title of the graph

Value

a list with ggplot2 object and the number of significant gene sets


csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.