plot_ora: ORA visualization

In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells

Description

Creates a bar plot with the results of module Over Representation Analysis (ORA)

Usage

plot_ora(fc, n = 10, pv_cut = 0.05, ...)

## S4 method for signature 'fcoex'
plot_ora(fc, n = 10, pv_cut = 0.05, ...)

Arguments

fc	Object of class fcoex.
n	number of enrichments to show
pv_cut	p-value significance cutoff. Default is 0.05.
...	parameters to plot_ora_single

Details

This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.

Value

Object of class fcoex with ORA plots

Examples

data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- pathwayPCA::read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
fc <- plot_ora(fc)

csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.