recluster: Recluster cells based on fcoex module composition

In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells

Description

Recluster cells based on fcoex module composition

Usage

recluster(
  fc,
  hclust_method = "ward.D2",
  dist_method = "manhattan",
  k = 2,
  verbose = TRUE
)

## S4 method for signature 'fcoex'
recluster(
  fc,
  hclust_method = "ward.D2",
  dist_method = "manhattan",
  k = 2,
  verbose = TRUE
)

Arguments

fc	Object of class fcoex
hclust_method	method for the hclust function. Defaults to "ward.D2".
dist_method	method for the dist function. Defaults to "manhattan".
k	desired number of clustes. Defaults to 2.
verbose	Adds verbosity, defaults to TRUE.

Value

Object of class data.frame with new clusters

Examples

data("fc")
fc <- recluster(fc)

csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.