mod_ora: Over Representation Analysis (ORA)
In csbl-usp/fcoex: FCBF-based Co-Expression Networks for Single Cells
Description
Usage
Arguments
Value
Examples
Description
This function was modified from the CEMiTool package.
Chunks of code were retained "as is"
Usage
1
2
3
4
Arguments
fc
A fcoex object.
gmt
A gmt file with gene sets for ora analysis
verbose
Controls verbosity. Defaults to FALSE.
Value
A fcoex object containing over-representation analysis data
Examples
1
2
3
4
data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- pathwayPCA::read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
csbl-usp/fcoex documentation built on Sept. 15, 2021, 7:42 a.m.
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Description Usage Arguments Value Examples
Description
This function was modified from the CEMiTool package. Chunks of code were retained "as is"
Usage
1 2 3 4 |
Arguments
fc |
A fcoex object. |
gmt |
A gmt file with gene sets for ora analysis |
verbose |
Controls verbosity. Defaults to FALSE. |
Value
A fcoex object containing over-representation analysis data
Examples
1 2 3 4 | data("fc")
gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
gmt_in <- pathwayPCA::read_gmt(gmt_fname)
fc <- mod_ora(fc, gmt_in)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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