calc.r2: calculate R2 from a list of variants;
In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets
Description
Usage
Arguments
Value
View source: R/rareGWAMA.TWAS.R
Description
calculate R2 from a list of variants;
Usage
1
calc.r2(vcf.ref.file, tabix.range, refGeno = "GT")
Arguments
vcf.ref.file
VCF reference file
tabix.range
tabix range for a list of variants;
refGeno
the FORMAT field for genotypes; could be GT or DS;
Value
calcualted r2 matrix; with positions being the row and colnames;
dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.
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Description Usage Arguments Value
View source: R/rareGWAMA.TWAS.R
Description
calculate R2 from a list of variants;
Usage
1 | calc.r2(vcf.ref.file, tabix.range, refGeno = "GT")
|
Arguments
vcf.ref.file |
VCF reference file |
tabix.range |
tabix range for a list of variants; |
refGeno |
the FORMAT field for genotypes; could be GT or DS; |
Value
calcualted r2 matrix; with positions being the row and colnames;
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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