convertChisq2Beta: convert chisq statistic to beta for binary trait assuming the...

In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

Description

convert chisq statistic to beta for binary trait assuming the variance for y;

Usage

convertChisq2Beta(statistic, beta.ori, var.y, af, N, binaryTrait = FALSE)

Arguments

statistic	chisq stat;
beta.ori	original beta; for getting the sign;
var.y	the variance for Y. for binary trait, the variance of y is frac.case*(1-frac.case); for continuous trait, the variance for y is typically set to 1;
af	allele freq;
N	sample size;

dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.