flipAllele: This is the function for flipping alleles

In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

Description

This is the function for flipping alleles

Usage

flipAllele(raw.data, raw.data.ori, refaltList, ix.pop, ix.var, log.mat.var,
  correctFlip = TRUE, analyzeRefAltListOnly = TRUE)

Arguments

raw.data	The input datasets to be considered flipped
raw.data.ori	The input datasets to be considered flipped
refaltList	The list consists of ref, alt, pos, af and af.diff.max, as well as the option of whether throw away sites with large af.differences checkAF;
ix.pop	index of the population
ix.var	index of the variant;
log.mat.var	The log for QC procedure;
correctFlip	Correct for score and covariance matrices for flipped alleles;

Value

A list consist of modified raw.data, ix.include and log.mat.var

dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.