rareMETALS.cleanScore: Single variant meta-analysis

In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

Description

Single variant meta-analysis

Usage

rareMETALS.cleanScore(score.stat.file, refaltList, hwe.cutoff, callrate.cutoff,
  af.diff.max = 0.7, checkAF = TRUE)

Arguments

score.stat.file	files of score statistics
refaltList	A list that contains pos, ref and alt for calibrating variant sites to have the right ref and alt alleles;
hwe.cutoff	Cutoffs of HWE p-values
callrate.cutoff	Cutoffs of call rate, lower than which will NOT be analyzed (labelled as missing)

Value

a list consisting of results

dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.