rareGWAMA.single.multiAllele: gateway function for multi-allelic analysis in rareGWAMA

In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

Description

gateway function for multi-allelic analysis in rareGWAMA

Usage

rareGWAMA.single.multiAllele(score.stat.file, imp.qual.file = NULL,
  tabix.range, alternative = "two.sided", col.impqual = 5,
  impQual.lb = 0.7, impQualWeight = FALSE)

Arguments

imp.qual.file	The imputation quality file names;
tabix.range	The tabix range for the variants to be analyzed;
alternative	The alternative hypothesis; only the default choice two.sided is implemented now;
col.impqual	The column number for the imputation quality files; The default choice is 5.
impQual.lb	The lower bound for the imputation quality cutoff; Variants with imputation quality less than the cutoffs are labelled as missing and removed from the meta-analysis
impQualWeight	Whether to apply the imputation quality based optimal weighting;
score	stat.file The score statistics file names;
cor.multiallele.file	The correlation information for multi-allelic sites;

Value

A list of formatted output;

dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.