setdiff_mod function was added. setdiff_mod allowed to correctly compare 2 diploids markers by returning the number of different alleles. In some rare case previously, the R basic comparison function with which and != was not working properly.
genet_dist function was modified with setdiff_mod ;
added unit tests for setdiff_mod in p3.
GenClone outputs are corrected (before: table of lists, now : table of vectors) ;
units tests on GenClone function (p6 and p7) are temporary suspended because they make Travis crash due to too long computing time ;
authorship correction.
psex and psex_Fis functions are corrected (thanks to Katia C.) ; Found a bug with pvalues generation with more than 9 loci: sample systematically re-orders loci then prevents pgen computation. Found a bug with warning message "No clone was found during Simulations" that stops the function. psex.rd file updated.
typo correction on author email.
factoR data for psex/psex_Fis is removed from package (now works with dbinom(), thanks to reviewer) ;
unit tests added for nearly every function (recommended by reviewers) ;
Travis added ;
email correction for better users service.
DESCRIPTION file: the package url was linked to dropbox and now to Github ;
psex.rd file: the old pvalue option was removed (thanks to reviewer) ;
export_genclone.rd file: res$loc.nall was removed (thanks to reviewer) and updated ;
freq_finder function (hidden function) was updated.
psex and psex_Fis functions now work with just ONE clone.
genclone function now named GenClone function to avoid problems with genclone objects ;
GenClone function now allowed missing coordinates ;
GenClone function now computes Fis with monomorphic loci.
export_genclone.Rd fixed (Adegenet instead of Adegnet) ;
clonal_index function now integrates N as first column and indicates N, G and R even if no clone are detected ;
vignettes are corrected with improvements.
nbrepeat in autocorrelation function now works with few number of repeats (< 10).
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