NEWS.md

In dbailleul/RClone: Partially Clonal Populations Analysis

RClone v1.0.3 (07/22/2020)

Minor fixes

• setdiff_mod function was added. setdiff_mod allowed to correctly compare 2 diploids markers by returning the number of different alleles. In some rare case previously, the R basic comparison function with which and != was not working properly.

• genet_dist function was modified with setdiff_mod ;

• added unit tests for setdiff_mod in p3.

RClone v1.0.2 (06/03/2016)

Minor fixes

• GenClone outputs are corrected (before: table of lists, now : table of vectors) ;

• units tests on GenClone function (p6 and p7) are temporary suspended because they make Travis crash due to too long computing time ;

• authorship correction.

RClone v1.0.2 (04/15/2016)

Minor fixes

• psex and psex_Fis functions are corrected (thanks to Katia C.) ; Found a bug with pvalues generation with more than 9 loci: sample systematically re-orders loci then prevents pgen computation. Found a bug with warning message "No clone was found during Simulations" that stops the function. psex.rd file updated.

• typo correction on author email.

RClone v1.0.1 (01/11/2016)

Minor changes

• factoR data for psex/psex_Fis is removed from package (now works with dbinom(), thanks to reviewer) ;

• unit tests added for nearly every function (recommended by reviewers) ;

• Travis added ;

• email correction for better users service.

Minor fixes

• DESCRIPTION file: the package url was linked to dropbox and now to Github ;

• psex.rd file: the old pvalue option was removed (thanks to reviewer) ;

• export_genclone.rd file: res$loc.nall was removed (thanks to reviewer) and updated ;

• freq_finder function (hidden function) was updated.

RClone v1.0.1 (11/27/2015)

Bug fixes

psex and psex_Fis functions now work with just ONE clone.

RClone v1.0.1 (11/24/2015)

Minor changes

• genclone function now named GenClone function to avoid problems with genclone objects ;

• GenClone function now allowed missing coordinates ;

• GenClone function now computes Fis with monomorphic loci.

Minor fixes

• export_genclone.Rd fixed (Adegenet instead of Adegnet) ;

• clonal_index function now integrates N as first column and indicates N, G and R even if no clone are detected ;

• vignettes are corrected with improvements.

Bug fixes

nbrepeat in autocorrelation function now works with few number of repeats (< 10).

dbailleul/RClone documentation built on May 17, 2021, 3:04 p.m.