Files in denalitherapeutics/archs4
Wrappers to query and extract ARCHS4 data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Archs4Repository.R
R/archs4-features.R
R/archs4-functional.R
R/bioc-containers.R
R/blacklist.R
R/data-directory.R
R/expression.R
R/geo-utils.R
R/h5utils.R
R/package.R
R/rmd-helpers.R
R/tidy.R
R/validate.R
R/zzz.R
README.Rmd
README.md
inst/extdata/blacklist.csv
inst/extdata/meta.yaml
inst/extdata/testdata-sample-ids.xlsx
inst/rmdparts/installation.Rmd
inst/rmdparts/references.Rmd
man/Archs4Repository.Rd
man/archs4_feature_info.Rd
man/archs4_file_info.Rd
man/archs4_file_path.Rd
man/archs4_local_data_dir_create.Rd
man/archs4_local_data_dir_validate.Rd
man/archs4_meta.Rd
man/archs4_sample_covariates.Rd
man/archs4_sample_info.Rd
man/archs4_sample_table.Rd
man/archs4_series_status.Rd
man/archs4_sources.Rd
man/as.DGEList.Rd
man/blacklist.Rd
man/create_augmented_feature_info.Rd
man/datadir.Rd
man/dot-h5read.Rd
man/estimate_norm_factors.Rd
man/estimate_repository_norm_factors.Rd
man/feature_lookup.Rd
man/feature_source.Rd
man/fetch_expression.Rd
man/geo_id_type.Rd
man/libstats.Rd
man/lookup_biosamples.Rd
man/lookup_gse.Rd
man/query_geo.Rd
man/retrieve_sra_metadata.Rd
tests/testthat.R
tests/testthat/helper-all.R
tests/testthat/test-archs4-functional.R
tests/testthat/test-bioc-containers.R
tests/testthat/test-expression-concordance.R
tests/testthat/test-expression.R
tests/testthat/test-feature-info.R
tests/testthat/test-sample-retrieval.R
vignettes/archs4.Rmd
vignettes/images/GSE52564-samples-section.png
vignettes/images/icons/INFO.txt
vignettes/images/icons/callout-border.png
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vignettes/images/icons/callouts/9.png
vignettes/images/icons/caution.png
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vignettes/images/icons/warning.png
vignettes/mystyles.css
