archs4_feature_info: Retrieves the feature (gene/transcript) information for the...

In denalitherapeutics/archs4: Wrappers to query and extract ARCHS4 data

Description

Only the gene symbols (meta/genes in gene expression hd5 file) or entrez transcript identifiers (meta/transcript for the transcript hdf5 file) are stored in thse data. We use create_augmented_feature_info() function to generate and store extra metadata for these features, which are then appended to these identifiers with this function.

Usage

feature_info(x, feature_type = "gene", source = "human",
  augmented = TRUE, ...)

archs4_feature_info(feature_type = "gene", source = "human",
  augmented = TRUE, datadir = getOption("archs4.datadir"), ...)

Arguments

x	an Archs4Repository
feature_type	gene or transcript?
source	human or mouse
augmented	include extra gene- or transcript-level features? Default: TRUE
...	pass through
datadir	the directory that stores the ARCHS4 data files

Value

a tibble of information

See Also

create_augmented_feature_info()

denalitherapeutics/archs4 documentation built on May 17, 2019, 1:29 p.m.