query_geo: Query NCBI GEO through its REST interface

In denalitherapeutics/archs4: Wrappers to query and extract ARCHS4 data

Description

Query NCBI GEO through its REST interface

Usage

query_geo(accession, target = c("self", "gsm", "gpl", "gse", "all"),
  validate = FALSE, verbose = FALSE)

Arguments

accession	Scalar character, GEO identifier for a series (GSE), a sample (GSM) or a platform (GPL).
validate	Scalar boolean, validate the retrieved xml file against NCBI's schema?

Value

xml2::xml_document object

Source

https://www.ncbi.nlm.nih.gov/geo/info/download.html

Examples

query_geo("GSE109171")

denalitherapeutics/archs4 documentation built on May 17, 2019, 1:29 p.m.