feature_lookup: Perform a loose/fuzzy lookup for a gene/transcript feature.

Description Usage Arguments Value Examples

Description

This funciton facilitates exploratory data analyses by trying to find gene or transcripts by different type of identifiers (symbol, ensembl_id, etc).

Usage

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feature_lookup(x, query, feature_type = "gene", source = "human", ...)

Arguments

x

An Archs4Repository

query

a character string of feature names to look for

feature_type

"gene" or "transcript"

source

organism dataset to lookup

Value

a tibble of features that match against the query. The first column is the value of the query itself. If no match is found for a query, its row is all NA.

Examples

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a4 <- Archs4Repository()
features <- feature_lookup(a4, c("CFAP65", "PECR", "ENSG00000131408"),
                           feature_type = "gene", source ="human")

denalitherapeutics/archs4 documentation built on May 17, 2019, 1:29 p.m.