lookup_gse: Retrieve information about a GEO series

Description Usage Arguments Value Examples

Description

Queries NCBI GEO's REST interface to retrieve e.g. title, summary and the list of samples for a GEO series.

Usage

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lookup_gse(accession, fields = c("Accession", "Title", "Summary",
  "Overall-Design", "Type", "Pubmed-ID", "Sample"), ...)

Arguments

accession

Scalar character, GEO series identifier e.g. GSE109171

fields

Character vector specifying which fields to extract from the XML file returned by GEO

...

Additional arguments passed on to the query_geo function.

Value

List the requested fields

Examples

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if (interactive()) {
  lookup_gse("GSE109171")
}

denalitherapeutics/archs4 documentation built on May 17, 2019, 1:29 p.m.