API for dengchunyu/scPagwas
A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data
| Global functions | |
|---|---|
| Boot_evaluate | Man page Source code |
| Bootstrap_P_Barplot | Man page Source code |
| Bootstrap_estimate_Plot | Man page Source code |
| Corr_Random | Man page Source code |
| GWAS_summary_input | Man page Source code |
| Genes_by_pathway_kegg | Man page |
| Get_CorrectBg_p | Man page Source code |
| Get_Pathway_heritability_contributions | Man page Source code |
| Get_bootresults_df | Man page Source code |
| Link_pathway_blocks_gwas | Man page Source code |
| Merge_celltype_p | Man page Source code |
| Merge_gPas | Man page Source code |
| Pagwas_perform_regression | Man page Source code |
| Parameter_regression | Man page Source code |
| PathwayPCAtest | Man page Source code |
| Pathway_annotation_input | Man page Source code |
| Pathway_block_func | Man page Source code |
| Pathway_pcascore_run | Man page Source code |
| Random_PCC | Source code |
| Single_data_input | Man page Source code |
| SnpToGene | Man page Source code |
| as_matrix | Man page Source code |
| bh.adjust | Man page Source code |
| block_annotation | Man page |
| block_annotation_hg37 | Man page |
| chrom_ld | Man page |
| closeConnection | Source code |
| corSparse | Man page Source code |
| correct_background | Man page Source code |
| fortify.Seurat.tsne | Man page Source code |
| fortify.Seurat.umap | Man page Source code |
| genes.by.celltype.pathway | Man page |
| genes.by.gobp.pathway | Man page |
| genes.by.hallmark.pathway | Man page |
| genes.by.reactome.pathway | Man page |
| genes.by.regulatory.pathway | Man page |
| genes.by.tft.pathway | Man page |
| getConnection | Source code |
| get_Pathway_sclm | Man page Source code |
| get_p_from_empi_null | Man page Source code |
| heritability_cor_scatterplot | Man page Source code |
| lfdr | Man page Source code |
| link_pwpca_block | Man page Source code |
| make_ld_matrix | Man page Source code |
| p_merge | Man page Source code |
| pa_meanexpr | Man page Source code |
| pi0est | Man page Source code |
| plot_bar_positie_nagtive | Man page Source code |
| plot_vln_Corgenes | Man page Source code |
| qvalue | Man page Source code |
| randomStrings | Source code |
| reduce_pathway | Man page Source code |
| scCount_data_input | Man page Source code |
| scGene_rankP | Man page Source code |
| scGene_scaleP | Man page Source code |
| scGet_PCC | Man page Source code |
| scGet_PCC2 | Source code |
| scPagwas_Visualization | Man page Source code |
| scPagwas_main | Man page Source code |
| scPagwas_main2 | Source code |
| scPagwas_perform_score | Man page Source code |
| scPagwas_score_filter | Man page Source code |
| scParameter_regression | Man page Source code |
| umap_theme | Man page Source code |
| xy2vector | Man page Source code |
