bootstrap_P_Barplot: Bootstrap_P_Barplot

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

Bootstrap_P_Barplot

Description

This bar plot shows the -log2(p value) for bootstrap result, using the ggplot packages

Usage

Bootstrap_P_Barplot(
  p_results,
  p_names,
  title = "Test scPagwas",
  figurenames = NULL,
  width = 5,
  height = 7,
  do_plot = TRUE
)

Arguments

p_results	vector p results
p_names	names for p
title	The title names of the plot
figurenames	The filename and address of the output plot, default is "test_barplot.pdf".IF figurenames= NULL, only plot the figure and have not pdf figure.
width	figure width, default is 5
height	figure height,default is 7
do_plot	whether to plot the plot.

Value

A figure of barplot in pdf format, red color is significant.

Author(s)

Chunyu Deng

Examples

library(scPagwas)
load(system.file("extdata", "Pagwas_data.RData", package = "scPagwas"))

Bootstrap_P_Barplot(
  p_results = Pagwas_data@misc$bootstrap_results$bp_value[-1],
  p_names = rownames(Pagwas_data@misc$bootstrap_results)[-1],
  width = 5,
  height = 7,
  do_plot = TRUE,
  title = "Test"
)

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.