Pathway_block_func: Pathway_block_func

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

Pathway_block_func

Description

Pathway_block_func

Usage

Pathway_block_func(
  Pagwas = NULL,
  Pachrom_block_list,
  chrom_gwas_list,
  singlecell = T,
  celltype = T,
  chrom_ld,
  backingpath,
  n.cores = 1
)

Arguments

Pagwas	NULL
Pachrom_block_list	result for chrome block
chrom_gwas_list	list of gwas block in chrom
singlecell	whether to run singlecell progress
celltype	whether to run celltype progress
chrom_ld	default is block_annotation
backingpath	file address for bk files, no "/" in the end.
n.cores	cores for regression

Value

Pagwas result list including Pathway block.

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.