get_Pathway_sclm: get_Pathway_sclm

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

get_Pathway_sclm

Description

get_Pathway_sclm

Usage

get_Pathway_sclm(
  pa_block,
  pca_scCell_mat,
  data_mat,
  rawPathway_list,
  snp_gene_df,
  n.cores = 1,
  backingpath,
  Rns
)

Arguments

pa_block	single pathway blocks.
pca_scCell_mat	Element in Pagwas.
data_mat	Element in Pagwas.
rawPathway_list	Element in Pagwas..
snp_gene_df	Element in Pagwas.
n.cores	cores for regression
backingpath	file address for bk files, no "/" in the end.
Rns	Random bk names

Value

lm result for pathway in single cell.

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.